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<h1>MITOMAP<br /> A human mitochondrial genome database</h1>
<h5>A compendium of polymorphisms and mutations in human mitochondrial DNA</h5>
<small>MITOMAP reports published and unpublished data on human mitochondrial DNA variation. Most of the data is hand-curated and, due to the massive volume of sequencing data being produced world wide, there is always a backlog of papers and data to be added. If you would like to fast-track inclusion of a paper and its data into MITOMAP, please email a pdf to mitomap&#64;email.chop.edu. We appreciate your help. Thanks.</small>
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<a target="_blank" href="http://www.sciencemag.org/content/vol283/issue5407/" ><img width="75" alt="Science Cover" src="%ATTACHURL%/Sciencecover.gif" height="101" /></a></td>
<td><a href="http://www4.clustrmaps.com/counter/maps.php?url=http://www.mitomap.org" id="clustrMapsLink0">
<img alt="Locations of visitors to this page" src="http://www4.clustrmaps.com/counter/index2.php?url=http://www.mitomap.org" style="border-color: initial; border-width: 0px; border-style: none" id="clustrMapsImg" title="Locations of visitors to this page" /></a></td>
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%RED% _FYI: To improve performance and to prevent further MITOMAP disruptions, we have requested a different host server. Thanks for your patience while this change is implemented._
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---+++++ MITOMAP Quick Reference
&nbsp;&nbsp;&nbsp;%ICON{led-gray}%&nbsp;<b>To search for point mutations, click <a href="../Main/SearchAllele">here</a></b>. The info button on the search page has more information.

&nbsp;&nbsp;&nbsp;%ICON{led-gray}%&nbsp;The rCRS is !GenBank number <b>NC_012920</b>. Click <a href="MitoSeqs">here</a> for details. 

|*General References* | |*Illustrations:* |
| [[HumanMitoSeq][The Annotated Human Mitochondrial DNA Sequence]] |&nbsp;&nbsp;|[[MitomapFigures][View Figures]] |
| [[MitoSeqs][The rCRS & other mtDNAs]] | &nbsp; | -Mitochondrial DNA Map |
| [[HumanMitoCode][Amino Acid Translation Tables]] | &nbsp; |-Eleven pathological mutations in tRNA |
| [[ReferenceList][Mitochondrial References, ALL (very large file)]]  &nbsp;  &nbsp;  [[ReferenceListAL][&#8226;  A-L only]] &nbsp;  &nbsp;  [[ReferenceListMZ][&#8226;  M-Z only]] | &nbsp; |-Mitochondrial energetics  |
| [[HaplogroupMarkers][Haplogroup Markers & Frequencies]] &nbsp;&nbsp; [[%ATTACHURL%/simple-tree-mitomap-2012.pdf][Simpler mtDNA Tree: Europe, Asia, Africa]]| &nbsp; | -Diabetes metabolism & the mitochondria  &nbsp; &nbsp;  &nbsp;  | 
| [[GenomeLoci][Mitochondrial DNA Function Locations (Gene Loci)]]| &nbsp; | -World migrations|
| [[MitoPolypeptide][Mitochondrial DNA Polypeptide Assignments]]| &nbsp; | -mtDNA Trees|
| [[MitoSeqs][Complete Mitochondrial Genome Sequences]]  |  |  |
| Archived Reports: | | |
| &nbsp; &nbsp; [[HumanMitoReport][Mitochondrial Human Genome Report]] | &nbsp; | *Other databases & tools:* |
| &nbsp; &nbsp; [[ContinentVariants][Common Continent-Specific mtDNA Variants, c.1995]] | &nbsp; | [[http://www.phylotree.org/][PhyloTree]] &nbsp;  &nbsp;  [[http://www.mtdb.igp.uu.se][mtDB]] &nbsp;  &nbsp; [[http://haplogrep.uibk.ac.at][HaploGrep]] |
| &nbsp; &nbsp; mtDNA RFLPs:  &nbsp;  [[RestrictionSitesHigh][ High Resolution]] &nbsp;  &nbsp;  [[RestrictionSitesLow][Low Resolution]] | &nbsp; |[[http://www.mitotool.org/][MitoTool]] &nbsp;  &nbsp;  [[http://mitowheel.org/mitowheel.html][MitoWheel]] &nbsp;  &nbsp;  [[http://www.hvrbase.org/][HvrBase]]   |
| | | [[http://mtmanager.yonsei.ac.kr/][mtDNA Manager]] &nbsp;  &nbsp; [[http://mitolsdb.igib.res.in/home.php][mitoLSDB]]&nbsp; &nbsp; [[http://mtsnp.tmig.or.jp/mtsnp/research_e.html][mtSNP]]  |
|*mtDNA Variants (includes mini insertions & deletions)*  | | [[http://mamit-trna.u-strasbg.fr/][Mammalian Mitochondrial tRNA Genes]]   |
| %U% [[PolymorphismsControl][Control Region Variants (16024-576)]] | | [[http://www.hmtdb.uniba.it/][HmtDB database]] &nbsp;  &nbsp;  [[http://mitominer.mrc-mbu.cam.ac.uk][MitoMiner]] |
| %U% [[PolymorphismsCoding][Coding & RNA Variants (577-16023, MTTF-MTTP)]]  | | [[http://www.empop.org/][EMPOP CR Database]] &nbsp;  &nbsp;  [[http://mtdna.gentis.ru/about/notes.htm#][mtTree.ru]] |
| [[MutationsSomatic][Somatic Mutations]]  | | [[http://tools.niehs.nih.gov/polg/][POLG Database]] &nbsp;  &nbsp;   |
| [[VariantSubmissionList][Collection of Unpublished Variants]]   | | [[MitoSites][Other Useful Mito Links on the Web]]   |
| |  |  |
|*mtDNA Mutations with Reports of Disease-Associations* | | |
|Organized by mtDNA location:  |  |  |
| &nbsp;  &nbsp; [[MutationsRNA][rRNA/tRNA Mutations]]  |  |  |
| &nbsp;  &nbsp; [[MutationsCodingControl][Coding & Control Region Mutations]]  |  |  |
|Organized by phenotype:  |  |  |
| &nbsp;  &nbsp; [[ClinicalPhenotypesRNA][rRNA/tRNA Mutations]]  |  |  |
| &nbsp;  &nbsp; [[ClinicalPhenotypesPolypeptide][Coding & Control Region Mutations]]  |  |  |
| &nbsp;  &nbsp; [[MutationsLHON][LHON Mutations]]  |  |  |
| |  |  |
|*Major Rearrangements* | | |
| [[DeletionsSingle][MtDNA Deletions]]  |  |  |
| [[DeletionsMultiple][Multiple mtDNA Deletions Within Individuals]]  |  |  |
| [[VariationInversions][MtDNA Inversions]]  |  |  |
| [[InsertionsSimple][MtDNA Simple Insertions]]   |  |  |
| [[ComplexRearrangements][MtDNA Complex Rearrangements]]   |  |  |
| |  |  |
|*Nuclear Genes Involved in Mitochondrial Disease*  | | |
| [[NuclearGenesStructural][Structural Nuclear Genes in Mitochondrial Disease]]  |  |  |
| [[NuclearGenesNonStructural][Non-Structural Nuclear Genes in Mitochondrial Disease]]  |  |  |
| [[PseudogeneList][Mitochondrial Pseudogenes]]  |  |  |
| |  |  |
|*Submittal of Data & How to Cite MITOMAP:*  |||
| [[VariantSubmission][Submit Unpublished mtDNA Variants]] |  |  |
| If you would like to submit published articles to be included in mitomap, please send the citation & a pdf to mitomap@email.chop.edu.<br/> &nbsp;  &nbsp; <small>(please put the word "Mitomap" in the subject line)</small>|||
| [[CitingMitomap][How to cite MITOMAP]]   |  |  |
| |  |  |
|*Other*  |||
|[[http://videocast.nih.gov/PastEvents.asp?c=6][Mitochondria Interest Group Video Casts]]  |  |  |
|*mtDNA in the news:* |||
| NY Times, May 2, 2000 [[http://www.nytimes.com/library/national/science/050200sci-genetics-evolution.html][The Human Family Tree:  10 Adams and 18 Eves]]  |||
| America Now, May 8, 2012 [[http://bit.ly/Ju2iNY]["Mito Kids:" Little soldiers fighting a deadly disease]]  |||

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|  *Map of the Human Mitochondrial DNA*  |
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Topic revision: r89 - 26 Apr 2013 - 14:32:04 - MarieLott
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