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MITOMAP: Mitochondrial DNA Function Locations

Last edited May 17, 2007
Map
Locus		 Map
Position(np)		 Shorthand Description Reference
MT-HV2 57-372 HVS2 Hypervariable segment 2 references
MT-OHR 110-441 OH H-strand origin references
MT-CSB1 213-235 CSB1 Conserved sequence block 1 references
MT-TFX 233-260 TFX mtTF1 binding site references
MT-TFY 276-303 TFY mtTF1 binding site references
MT-CSB2 299-315 CSB2 Conserved sequence block 2 references
MT-HPR 317-321 - replication primer references
MT-CSB3 346-363 CSB3 Conserved sequence block 3 references
MT-4H 371-379 mt4H mt4 H-strand control element references
MT-3H 384-391 mt3H mt3 H-strand control element references
MT-LSP 392-445 PL L-strand promoter references
MT-TFL 418-445 - mtTF1 binding site references
MT-TFH 523-550 - mtTF1 binding site references
MT-HSP1 545-567 PH1 Major H-strand promoter references
MT-TF 577-647 F tRNA phenylanine references
MT-HSP2 645-645 PH2 Minor H-strand promoter references
MT-RNR1 648-1601 12S 12S ribosomal RNA references
MT-TV 1602-1670 V tRNA valine references
MT-RNR2 1671-3228 16S 16S ribosomal RNA references
MT-RNR3 3206-3228 - (5S-like sequence) references
MT-TER 3229-3256 - Transcription terminator references
MT-TL1 3230-3304 L(UUA/G) tRNA leucine 1 references
MT-NC1 3305-3306 NC1 non-coding nucleotides references
MT-ND1 3307-4262 ND1 NADH Dehydrogenase subunit 1 references
MT-TI 4263-4331 I tRNA isoleucine references
MT-TQ 4329-4400 Q tRNA glutamine references
MT-NC2 4401-4401 NC2 non-coding nucleotides references
MT-TM 4402-4469 M tRNA methionine references
MT-ND2 4470-5511 ND2 NADH dehydrogenase subunit 2 references
MT-TW 5512-5579 W tRNA tryptophan references
MT-NC3 5580-5586 NC3 non-coding nucleotides references
MT-TA 5587-5655 A tRNA alanine references
MT-NC4 5656-5656 NC4 non-coding nucleotides references
MT-TN 5657-5729 N tRNA asparagine references
MT-OLR 5721-5798 OL L-strand origin references
MT-TC 5761-5826 C tRNA cysteine references
MT-TY 5826-5891 Y tRNA tyrosine references
MT-NC5 5892-5903 NC5 non-coding nucleotides references
MT-CO1 5904-7445 COI Cytochrome c oxidase subunit I references
MT-TS1 7446-7516 S(UCN) tRNA serine 1 references
MT-NC6 7517-7517 NC6 non-coding nucleotide references
MT-TD 7518-7585 D tRNA aspartic acid references
MT-CO2 7586-8269 COII Cytochrome c oxidase subunit II references
MT-NC7 8270-8294 NC7 non-coding nucleotides references
MT-TK 8295-8364 K tRNA lysine references
MT-NC8 8365-8365 NC8 non-coding nucleotide references
MT-ATP8 8366-8572 ATPase8 ATP synthase F0 subunit 8 references
MT-ATP6 8527-9207 ATPase6 ATP synthase F0 subunit 6 references
MT-CO3 9207-9990 COIII Cytochrome c oxidase subunit III references
MT-TG 9991-10058 G tRNA glycine references
MT-ND3 10059-10404 ND3 NADH dehydrogenase subunit 3 references
MT-TR 10405-10469 R tRNA arginine references
MT-ND4L 10470-10766 ND4L NADH dehydrogenase subunit 4L references
MT-ND4 10760-12137 ND4 NADH dehydrogenase subunit 4 references
MT-TH 12138-12206 H tRNA histidine references
MT-TS2 12207-12265 S(AGY) tRNA serine2 references
MT-TL2 12266-12336 L(CUN) tRNA leucine2 references
MT-ND5 12337-14148 ND5 NADH dehydrogenase subunit 5 references
MT-ND6 14149-14673 ND6 NADH dehydrogenase subunit 6 references
MT-TE 14674-14742 E tRNA glutamic acid references
MT-NC9 14743-14746 NC9 non-coding nucleotides references
MT-CYB 14747-15887 Cytb Cytochrome b references
MT-TT 15888-15953 T tRNA threonine references
MT-ATT 15925-499 ATT membrane attachment site references
MT-NC10 15954-15954 NC10 non-coding nucleotides references
MT-TP 15955-16023 P tRNA proline references
MT-DLOOP 16024-576 CR/D-Loop Control Region, including Displacement loop references
MT-HV1 16024-16383 HVS1 Hypervariable segment 1 references
MT-7SDNA 16106-191 7S DNA 7S DNA references
MT-TAS 16157-16172 TAS termination-associated sequence references
MT-5 16194-16208 mt5 control element references
MT-3L 16499-16506 mt3L L-strand control element references


Note:

"D-Loop" in this database refers to the non-coding region between Proline and Phenylalanine (np 16024-576).

Locus names are the official designations delineated by the given nucleotide numbers. The map positions correspond to the nucleotide pair(np) numbers determined from the DNA sequence.

Notes: mtTF1=mitochondrial transcription factor, Y=either pyrimidine, N=any base.

H-strand replication origin positions have been identified at np 110, 147, 169, 191, 219, 310, 441.

L-strand promoter positions have been identified at np 407, 392-435.

H-strand promoter positions have been identified at np 559-561.

L-strand replication origin positions have been identified at np 5721-5781, 5761, 5799.