Mitochondrial DNA-like sequences in the nucleus (NUMTs)1
Nuclear mitochondrial DNA sequences (NUMTs) are common in eukaryotes. Human mtDNA sequences are listed below by their location in the human nuclear genome. Celera Scaffold and GenBank accession numbers are indicated for each NUMT-containing contig. This is a work in progress and will be continually updated over the next few months.
Date of last update: September 29, 2006.|
Chromosome Location |
Celera Scaffold and
|
% rCRS similarity |
mtDNA Location (rCRS:J01415.2) |
|
1p36.3 |
GA_x5J8B7P0VAE:1..500000 GenBank: AL663100.12 |
82 81 |
1123-910 1117-910 |
|
1p36.3 |
GA_x5J8B7P0VAE:4000001..4500000 GenBank: AL356693.37 |
90 90 |
2466-2675 2675-2466 |
|
1p36.3 |
GA_x5J8B7P0VAE:1000001..1500000 GenBank: AL139415.10 |
89 89 |
8040-8202 8040-8202 |
|
1p34.3 |
GA_x5L2HTVAVSK:8500001..9000000 GenBank: AL513220.9 |
100 100 |
8934-9007 8934-9007 |
|
1p32 |
GA_x54KRE9971S:1..3319 AL645730.10 |
78 7 8 |
4666-5022 4608-5022 |
|
1p31 |
GA_x5HB7VCJ5FA:3500001..4000000 GenBank: AC096951.2 |
89 88 |
16567-16401 16567-16401 |
|
1p13 |
GenBank: AL627169.8 |
74 |
5855-9316 |
|
1p22 |
GenBank: AL117351.12 |
69 75 71 75 67 70 72 78 72 . 66 68 75 75 77 65 80 88 70 69 67 |
1721-3106 5566-5892 6841-7680 7863-8246 8688-9191 9921-10579 12032-12340 12586-12653 12639-12875 Other Species: 4572-5438 (NC_001601.1 blue whale mtDNA) 5767-5990 (NC_001601.1 blue whale mtDNA) 7065-7226 (CO2) (NC_001779.1 rhinoceros mtDNA) 4530-4620 (NC_001950 spotted catshark mtDNA) 7753-7826 (NC_001779.1 rhinoceros mtDNA) 7768-7861 (NC_001665.1 rat mtDNA) 7924-8071 (NC_001779.1 rhinoceros mtDNA) 8579-8620 (NC_002009.1 fruit eating bat mtDNA) 8697-8875 (NC_001821.1 armadillo mtDNA) 10915-11904 (NC_001601.1 blue whale mtDNA) 12665-12897 (NC_001602.1 gray seal mtDNA) |
|
1p11 |
AC022192.3 |
82 80 74 73 |
987-1534 15042-15087 5604-6979 9394-10319 |
|
1q12 |
GA_x54KRE8AV33:1..500000 GenBank: AC068398.3 |
88 74 74 83 |
6870-6981 9386-10319 5596-6979 987-1526 |
|
1q24 |
GA_x54KRE8EL5L:6500001..7000000 GenBank: AL160059.7 |
76 77 |
12143-12536 12143-12536 |
|
1q43 |
GA_x5J8B7NYNCY:4000001..4500000 GenBank: AL590396.13 |
81 78 70 72 |
12562-6189 573-6196 12-244 12156-16563 |
|
1q43 |
GA_x5J8B7NYNCY:6500001..7000000 GenBank: AL451068.13 |
74 71 71 74 |
9771-14799 14796-15722 14796-15722 9771-14799 |
|
2p22 |
GA_x5L2HTTHY8E:16000001..16500000 GenBank: AC007317 |
88 88 |
1124-956 1124-966 |
|
2p16 |
GA_x5L2HTTHY8E:6500001..7000000 GenBank: AC009234 |
83 83 |
6998-6270 6998-6270 |
|
2p12 |
GA_x54KRE9UVK8:5500001..6000000 GenBank: AC007400 |
90 90 |
2998-3103 3103-2998 |
|
2p11.2 |
GA_x54KRE9UVK8:12000001..12500000 GenBank: AC013262.7 |
87 87 |
8103-7862 8110-7862 |
|
2p11.1 to centromere |
GA_x54KRE9YMAP:1..500000 GenBank: AC097374.3 |
84 74 77 84 85 74 77 . 92 86 |
987-1511 5624-6973 9394-10138 987-1511 15042-15087 5624-6973 9394-10138 Other Species: 9586-9513(ND3) (NC_002080.1 hedgehog mtDNA9640-9747(ND3) (NC_001646 orangutan mtDNA) |
|
2p11.1 (Celera) |
GA_x54KRE9UVK8:13000001..13500000 GenBank: AC098817.3 |
71 92 85 71 73 85 . 87 92 64 |
11593-16569 336-404 577-710 11592-16567 334-402 575-708 Other Species :15964-16011(NC_000934.1 elephant_mtDNA ) 15303-15361 (tRNAThr)(NC_001992.1 baboon mtDNA 564-798(Dloop)(AF311721 gibbon mtDNA) |
|
2q13 |
AC021029.5 |
74 73 85 |
9394-10319 5612-6976 987-1511 |
|
2q13 |
GA_x5J8B7P878N:12500001..13000000 GenBank: NT_005445.2 |
81 83 85 71 |
596-6431 16434-16563 16444-60 16434-6431 |
|
2q14.1 |
GA_x5J8B7P878N:9000001..9500000 GenBank: NT_025657.1 |
76 74 74 74 75 75 78 74 74 74 75 |
13247-13907 12744-13215 11276-12755 9785-11318 8513-9755 8513-9692 9726-9796 9785-11318 11550-12676 12751-13209 13247-13907 |
|
2q14.1 |
AC092107.5 |
84 75 78 |
987-1511 5613-6976 9394-10138 |
|
2q14.2 |
GA_x5J8B7P878N:3500001..4000000 GenBank: AC097499.3 |
79 93 81 74 79 93 78 |
575-998 206-235 11-76 16295-16563 16402-16563 206-235 577-998 |
|
2q21 |
GA_x5L2HTVCF7A:1..849 GA_x5HB7VCBQU9:1..1119 GenBank: AC068137.8 |
75 83 75 72 76 75 |
10005-10859 11400-12340 3799-15398 3646-3781 15391-15534 3658-3762 |
|
2q21 |
AC023928.3 |
78 73 76 88 73 84 |
5555-6145 5171-5550 575-5176 212-245 16304-16562 11-60 |
|
2q21 |
AC073869.5 |
74 73 78 75 77 78 |
10657-15398 10612-10515 6534-6461 6380-10519 3658-6262 15391-15534 |
|
2q22 |
GA_x5L2HTTEENY:37500001..38000000 GenBank: AC013437.8 |
71 73 80 76 76 80 67 73 71 |
7754-9764 9841-16565 577-2173 2181-2393 2179-2391 575-2171 11-258 9840-16563 7753-9763 |
|
2q22 |
AC018856.4 |
75 73 84 71 73 71 77 88 79 81 |
10310-9840 9755-8554 8383-8295 8185-7753 10380-15933 15593-16122 16295-16563 11-60 575-2139 2179-2319 |
|
2q22 |
AC092156.2 |
76 76 88 84 73 |
5171-6145 575-5176 212-245 11-60 16304-16562 |
|
2q23.3 |
AC016147.12 AC068744.2 |
77 75 84 86 |
9394-10138 5613-6976 987-1394 4145-4223 |
|
2q23 |
GA_x5L2HTTEENY:33000001..33500000 GenBank: AC069333.8 |
90 92 |
2771-2856 2769-2848 |
|
2q23 |
GA_x5L2HTTEENY:31500001..32000000 GenBank: AC105402.5AC016763.8 |
98 74 98 73 |
611-742 16444-16563 611-742 16444-16563 |
|
2q23 |
AC092662.2 |
81 73 |
4848-6196 11801-15087 |
|
2q32 |
GA_x5L2HTTEENY:1000001..1500000 GenBank: AC062033.2 |
80 80 |
823-1270 833-1264 |
|
2q34 |
GA_x54KRE9S8TU:6500001..7000000 GenBank: AC007282.4 and in AC007283.3 |
75 75 69 68 67 66 . 69 |
10412-13131 10412-13131 12427-13617 11705-12323 9495-11610 7241-9066 Other Species: 9743-9441 (NC_001602.1 whale mtDNA |
|
2q34 |
GA_x54KRE9S8TU:8000001..8500000 GenBank: NT_005229.2 |
74 78 75 77 77 |
6944-11067 11082-11341 10897-10790 15585-15497 6424-5769 |
|
2q37 |
GA_x54KRE9T42T:17500001..18000000 GenBank: AC108203.5AC010735.11 |
81 91 81 91 |
2648-2742 890-1048 2648-2742 890-1048 |
|
2q37 |
GA_x54KRE9U2AY:8000001..8500000 GenBank: AC012305.7 |
81 |
777-1032 |
|
2q37 |
GA_x54KRE9U2AY:10000001..10500000 GenBank: AC112721.3 |
79 86 89 95 92 92 91 91 86 84 82 84 74 89 91 92 91 92 92 92 91 92 89 92 92 89 73 74 |
13246-13587 13048-13130NN 13048-13103 13059-13103 13048-13103 13049-13103 13048-13103 13048-13103 12989-13103 12568-12683 12143-12333 11913-11982NN 13048-14229 13048-13103 13048-13103 13048-13103 13048-13103 13048-13103 13048-13103 13048-13103 13048-13103 13048-13103 13048-13103 13048-13103 13048-13103 13049-13103 11797-13103 10087-10319 |
|
3p21 |
AC027471.3 |
75 79 |
10152-10319 9485-9991 |
|
3p21 |
GA_x54KREA3PFF:2500001..3000000 GenBank: AC092796.2 |
79 79 |
10428-10598 10394-10643 |
|
3p11 |
GA_x54KREACQDQ:2500001..3000000 GenBank: AC104435.2 |
82 |
9137-9366 |
|
3p11 |
GA_x54KREACQDQ:6500001..7000000 GenBank: AC096922.2 |
100 84 96 81 83 96 81 100 |
12612-12640 3058-3217-> contiguous to next ->4354-4429 16086-16124 3058-3216 4354-4429 16086-16146 12612-12640 |
|
3q11.1 |
GA_x54KREA92UK:500001..1000000 GenBank: NT_022497.2 |
72 |
6027-9316 |
|
3q11.1 |
GA_x54KREA9LET:2500001..3000000 GenBank: AC024033.4AC106717.2 |
97 84 94 84 |
(NNN)2583-2718 6535-6679 1396-2718 6535-6683 |
|
3q12 |
GA_x5HB7VCG0V5:18500001..19000000 |
73 74 78 70 75 74 78 |
10660-12340 8620-10582 576-858 12464-14370 5975-6204 3601-4816 1020-2048 |
|
3q13.3 |
GA_x5HB7VCG0V5:4500001..5000000 GenBank: AC117472.3 |
81 |
7161-7773 |
|
3q25 |
GA_x5L2HTULD24:26500001..27000000 GenBank: AC016920.14 |
90 83 85 |
1927-2141 2007-2316 1925-2314 |
|
3q26.1 |
GA_x5L2HTULD24:32000001..32500000 GenBank: AC104629.10 |
70 74 78 69 72 73 |
11971-12245 9110-10897 1972-2067 1544-1968 1362-1503 612-1375 |
|
3q26.3 |
GA_x5L2HTULD24:37500001..38000000 GenBank: AC008134.3 |
86 |
6708-6931 |
|
4p16.2 |
AL137218.3; AL354697.5 |
78 78 74 85 |
9450-10138 9394-10138 5641-5976 987-1511 |
|
4p16 |
GA_x54KREAGLJJ:4500001..5000000 GenBank: AC093846.3 |
78 |
4613-5233 |
|
4p15.3 |
GA_x54KREAGLJJ:7000001..7500000 GenBbank: AC110758.3 |
82 |
13098-13388 |
|
4p15.2 |
AC092436.5 |
73 73 72 73 |
11303-12301 9446-11290 11288-12301 9440-11293 |
|
4p15.2 |
GA_x54KREAGLJJ:17500001..18000000 GenBank: AC093854.2 |
94 |
2899-3050 |
|
4p11 |
GA_x5J8B7PYEPE:4000001..4500000 GenBank: AC104646.5 |
96 |
14981-15073 |
|
4q11 |
GA_x5HB7VD3DQW:4000001..4500000 GenBank: AC097648.2 (4q12-4q13 border) |
78 77 79 79 67 77 78 |
9466-10836 13029-16238NNN 9169-9410 9169-9410 110-426 13029-16569 9466-10836 |
|
4q13 |
GA_x5HB7VD3DJW:8500001..9000000 GenBank: AC114801.4; AC093897.3 |
77 79 91 84 |
2090-2472 15116-15197 2225-2456 15116-15174 |
|
4q21 |
GA_x54KREAHVLE:6000001..6500000 GenBank: AF163864 |
83 |
2856-3075 |
|
4q21 |
GA_x54KREAHVLE:9000001..9500000 GenBank: AC022317.8 |
80 |
2790-3590 |
|
4q26 |
GA_x54KREAHVSH:2000001..2500000 GenBank: NT_031781.1 (and in NT_022790.2) |
78 64 68 76 79 78 |
575-3161 357-456 11-239 16498-16562 16414-16562 575-3161 |
|
4q28 |
GA_x54KREAK5QS:8500001..9000000 GenBank: AC108045.3 |
85 |
2008-2388 |
|
4q31.3 |
GA_x5HB7VCDYHN:9500001..10000000 GenBank: AC097526.3 |
75 77 |
664-15579 664-15555 |
|
4q34 |
GA_x5HB7VCDYHN:2500001..3000000 GenBank: AC114770.4 |
93 |
12250-12417 |
|
4q35 |
GA_x5L2HTUQ8NL:5000001..5500000 GenBank: AC018710.4 |
84 |
7625-7773 |
|
5p15.3 |
GA_x5J8B7Q24ES:1500001..2000000 GenBank: AC091967.3 |
79 79 78 79 |
6957-7908 6597-7111 6957-7956 6957-7111 |
|
5p15.3 |
GA_x5J8B7Q2FPT:5500001..6000000 GenBank: AC034217.6; AC002087.1 |
71 70 81 87 87 81 70 71 |
14164-16569 11-259 596-1087 15978-16024 15978-16024 596-1087 11-259 14164-16569 |
|
5p13 |
GA_x54KREAPDRV:1..929 GenBank: AC021965.3 |
82 87 |
6117-6408 6117-15183 |
|
5p13 |
GA_x54KREAR86K:500001..1000000 GenBank: AC109579.1 |
82 |
3822-4308 |
|
5q13 |
GA_x5J8B7Q1L5Q:11500001..12000000 GenBank: AC022223.18 |
93 |
None in Celera 341-2697 |
|
5q14/15 |
GA_x54KREANY7M:1..500000 GenBank: NT_023290.4 |
78 76 78 |
5934-7908 7908-7543 5934-7908 |
|
5q14 |
GA_x54KREANQ9F:2000001..2500000 None in GenBank. |
90 |
12662-12782 |
|
5q14.3 |
GA_x54KREAQK1W:1..551 And:GA_x54KREANNNA:1..551 GenBank: AC013344.4; AC018806.4; AC093311.2 |
84 84 84 86 86 . 88 |
15576-16041 15576-16041 8413-8484 12662-16124 12662-16124 Other Species: 7970-8003 (NC_001794.1 wallaroo mtDNA) |
|
5q21 |
AC112203.2 |
67 71 |
13799-14336 14330-16033 |
|
5q21 |
GA_x5J8B7Q1NA9:1..500000 GenBank: AC114285.2 |
90 90 |
14658-14829 14658-14829 |
|
5q23 |
GA_x54KREAQM8V:1500001..2000000 GenBank: AC008565 |
79 |
383-708 |
|
5q31 |
GA_x54KREAQM8V:4500001..5000000 GenBank: AC026409.4 |
82 84 |
128-251 574-1537 |
|
5q32 |
GA_x5HB7VCVS5L:1500001..2000000 Maybe GenBank: AC008670.6 |
90 93 |
15186-15487 10269-15487 |
|
6p25 |
AL451141.13; Harbors AF035429.1 and AF134583.1/AL359496.30 |
76 98 98 98 |
8692-8495 5804-8384 3914-9755 3914-9755 |
|
6p21.2 |
GA_x54KREAYBCL:23000001..23392619 GenBank: AL731683.11 |
78 |
9096-9888 |
|
6q16 |
GA_x54KREB0N5G:3000001..3500000 GenBank: AL078595.12 |
83 71 |
4150-4487 15478-15811 |
|
6q16 |
GA_x54KREB0N5G:5500001..6000000 GenBank: AL132766.13 |
81 85 88 85 |
6532-6745-> 10622-10474-> 5521-5622-> 8774-8437 |
|
6q23 |
GA_x5L2HTU8439:15500001..16000000 GenBank: AL356774.13AL137783.12 |
83 77 83 77 |
15395-15628 15167-15283 15395-15627 15167-15283 |
|
6q25 |
GA_x54KREAVE16:6500001..7000000 GenBank: AL603908.3 |
81 |
7451-11649 |
|
6q26 |
GA_x54KREAVE16:3500001..4000000 GenBank: AL158033.18 |
85 |
3163-3380 |
|
7p14 |
GA_x5HB7VCTE59:1..151713 Also partly in GenBank: M11577 |
74 |
10657-15398 |
|
7p14 ) |
GA_x5HB7VC7SEG:500001..1000000 GenBank: AC069285.8; AC115220.1 |
83 75 76 86 90 76 75 83 |
3117-3191 3430-8634 8662-11973 8758-8823 15673-15713 8662-11973 3430-8634 3117-3191 |
|
7p14 |
GA_x5L2HTTW8W2:1..4474 GenBank: AC099654.5 (NUMT in intron of XM_094983.1) |
74 74 69 88 74 86 |
9395-13830 8316-15614 15755-16569 11-60 3819-16563 11-60 |
|
7p12 |
GA_x5HB7VCL761:1..500000 GenBank: AC004844.1 |
91 |
2418-2574 |
|
7q11.1 |
GA_x5L2HTUEKN6:500001..1000000 GenBank: AC006013AC093655.4 *The fragment
5385-5415 is not |
83 77 75 78 90 77 83 78 74 |
7175-7312 7303-7537 11122-11408 11307-11527 *5385-5415 7303-7537 7175-7312 11307-11526 11122-11407 |
|
7q11.1 |
GA_x5L2HTUEKN6:2000001..2500000 GenBank: AC092100.5 |
70 72 78 74 74 |
8510-8741 7515-8396 6594-7531 5513-6553 5239-5525 |
|
7q31.2 |
GA_x54KREB2RL0:16000001..16500000 GenBank: AC004112.2 |
73 |
13065-16031 |
|
7q32 |
AC004979.1; |
75 82 81 |
3292-6623 2740-3300 12562-12731 |
|
7q34 |
GA_x54KREB2R4M:1..1991 GenBank: AC119751.3 |
78 81 79 76 |
9471-10138 10149-10234 9485-10138 10149-10319 |
|
7q36 |
GA_x54KREB3J6B:1..500000 GenBank: NT_007772.1 |
82 75 |
2740-3300 3292-6623 |
|
7q36 |
GA_x54KREB449V:1500001..2000000 GenBank: NT_007914.8|Hs7_8071 |
98 |
1613-1708 |
|
7q36 |
GA_x54KREB44CJ:500001..1000000 GenBank: U66061NT_023640.7 |