High Frequency Haplogroups

m.9540T>C: 17883 sequences (31.423% overall in the FL sequence set)

Lineage	Top Level HG	Top Level HG Branch (ltr-num)	HG Branch (ltr-num-ltr)
L 6131 (99.7%)	L0 1671 (99.8%)	L0 1671 (99.8%)	L0a 677 (99.9%) L0d 812 (99.8%) L0f 50 (100.0%) L0g 10 (100.0%) L0k 120 (100.0%)
L1 849 (99.8%)	L1 849 (99.8%)	L1b 287 (99.7%) L1c 562 (99.8%)
L2 1322 (99.8%)	L2 1309 (98.8%)	L2 13 (100.0%) L2a 1037 (99.8%) L2b 101 (99.0%) L2c 130 (100.0%) L2d 24 (100.0%) L2e 17 (100.0%)
L3 2131 (99.6%)	L3 2126 (99.3%)	L3a 29 (100.0%) L3b 396 (99.5%) L3d 396 (100.0%) L3e 878 (99.8%) L3f 260 (100.0%) L3h 69 (98.6%) L3i 36 (97.3%) L3k 18 (94.7%) L3x 41 (100.0%)
L4 109 (98.2%)	L4 109 (98.2%)	L4a 19 (95.0%) L4b 90 (98.9%)
L5 37 (100.0%)	L5 37 (100.0%)	L5a 29 (100.0%)
L6 12 (100.0%)	L6 12 (100.0%)
M 11718 (99.5%)	C 1979 (99.7%)	C	C 524 (99.8%)
C1 348 (100.0%)	C1b 136 (100.0%) C1c 58 (100.0%) C1d 145 (100.0%)
C4 738 (99.6%)	C4 29 (100.0%) C4a 444 (99.8%) C4b 224 (99.1%) C4c 33 (100.0%)
C5 182 (100.0%)	C5a 70 (100.0%) C5b 43 (100.0%) C5c 36 (100.0%) C5d 32 (100.0%)
C7 187 (98.9%)	C7 26 (100.0%) C7a 156 (99.4%)
D 2610 (99.7%)	D1 477 (100.0%)	D1 274 (100.0%) D1a 27 (100.0%) D1e 20 (100.0%) D1f 52 (100.0%) D1g 36 (100.0%) D1j 37 (100.0%)
D2 96 (100.0%)	D2a 64 (100.0%) D2b 22 (100.0%)
D3 45 (100.0%)	D3 45 (100.0%)
D4 1552 (99.6%)	D4 73 (100.0%) D4a 162 (99.4%) D4b 278 (99.6%) D4c 79 (100.0%) D4e 182 (99.5%) D4f 16 (100.0%) D4g 81 (98.8%) D4h 118 (100.0%) D4i 44 (100.0%) D4j 302 (99.3%) D4l 41 (100.0%) D4m 34 (100.0%) D4n 18 (100.0%) D4o 57 (100.0%) D4p 12 (100.0%) D4q 27 (100.0%) D4s 13 (100.0%)
D5 407 (99.5%)	D5a 222 (100.0%) D5b 160 (98.8%) D5c 24 (100.0%)
D6 33 (100.0%)	D6a 20 (100.0%) D6c 13 (100.0%)
E 460 (98.9%)	E1 377 (98.7%)	E1a 375 (98.7%)
E2 83 (100.0%)	E2a 49 (100.0%) E2b 32 (100.0%)
G 553 (99.8%)	G	G 10 (100.0%)
G1 165 (100.0%)	G1a 82 (100.0%) G1b 68 (100.0%) G1c 15 (100.0%)
G2 318 (100.0%)	G2a 253 (100.0%) G2b 50 (100.0%) G2c 10 (100.0%)
G3 56 (98.2%)	G3a 38 (97.4%) G3b 18 (100.0%)
M 5480 (99.4%)	M	M 57 (98.3%)
M1 231 (100.0%)	M1 17 (100.0%) M1a 181 (100.0%) M1b 33 (100.0%)
M2 243 (98.0%)	M2a 131 (98.5%) M2b 100 (97.1%)
M3 177 (100.0%)	M3a 89 (100.0%) M3c 45 (100.0%) M3d 29 (100.0%)
M4 24 (92.3%)	M4a 15 (93.8%)
M5 190 (98.4%)	M5a 139 (100.0%) M5b 29 (100.0%) M5c 16 (88.9%)
M6 26 (100.0%)	M6a 21 (100.0%)
M7 1532 (99.8%)	M7a 106 (100.0%) M7b 654 (99.7%) M7c 772 (99.9%)
M8 98 (100.0%)	M8a 97 (100.0%)
M9 317 (99.7%)	M9a 313 (100.0%)
M10 67 (100.0%)	M10a 58 (100.0%)
M11 36 (100.0%)	M11a 20 (100.0%) M11b 10 (100.0%)
M12 110 (100.0%)	M12a 64 (100.0%) M12b 44 (100.0%)
M13 72 (100.0%)	M13a 41 (100.0%) M13b 13 (100.0%) M13c 17 (100.0%)
M17 59 (100.0%)	M17a 20 (100.0%) M17c 39 (100.0%)
M18 25 (92.6%)	M18a 16 (100.0%)
M20 60 (100.0%)	M20 60 (100.0%)
M21 82 (100.0%)	M21a 33 (100.0%) M21b 49 (100.0%)
M23 232 (99.6%)	M23 232 (99.6%)
M24 44 (100.0%)	M24a 25 (100.0%) M24b 18 (100.0%)
M26 10 (100.0%)	M26 10 (100.0%)
M27 144 (100.0%)	M27a 49 (100.0%) M27b 66 (100.0%) M27c 29 (100.0%)
M28 62 (100.0%)	M28a 56 (100.0%)
M29 15 (100.0%)
M30 127 (100.0%)	M30 67 (100.0%) M30b 10 (100.0%) M30c 14 (100.0%) M30d 14 (100.0%)
M31 29 (100.0%)	M31a 24 (100.0%)
M32 163 (97.6%)	M32a 10 (100.0%) M32c 151 (98.7%)
M33 89 (100.0%)	M33a 42 (100.0%) M33b 18 (100.0%) M33c 21 (100.0%)
M34 11 (100.0%)
M35 99 (100.0%)	M35a 32 (100.0%) M35b 58 (100.0%)
M36 37 (97.4%)	M36d 27 (96.4%)
M37 33 (97.1%)	M37 21 (100.0%) M37e 10 (90.9%)
M38 24 (100.0%)
M39 42 (100.0%)	M39b 29 (100.0%)
M40 29 (100.0%)	M40a 28 (100.0%)
M41 12 (100.0%)
M42 61 (96.8%)	M42 22 (100.0%) M42a 22 (95.7%) M42b 17 (94.4%)
M44 12 (100.0%)	M44a 11 (100.0%)
M45 29 (100.0%)	M45 10 (100.0%) M45a 19 (100.0%)
M46 12 (100.0%)
M49 43 (100.0%)	M49a 16 (100.0%) M49c 14 (100.0%)
M50 18 (100.0%)	M50a 13 (100.0%)
M51 52 (100.0%)	M51a 44 (100.0%)
M52 49 (94.2%)	M52a 28 (90.3%) M52b 20 (100.0%)
M53 25 (92.6%)	M53b 23 (95.8%)
M54 11 (100.0%)	M54 11 (100.0%)
M55 14 (100.0%)	M55 14 (100.0%)
M57 13 (100.0%)
M60 14 (100.0%)	M60a 10 (100.0%)
M61 26 (100.0%)	M61 17 (100.0%)
M62 22 (100.0%)	M62b 18 (100.0%)
M65 38 (100.0%)	M65a 27 (100.0%)
M66 12 (92.3%)
M68 26 (100.0%)	M68a 25 (100.0%)
M69 14 (100.0%)	M69a 13 (100.0%)
M71 95 (100.0%)	M71 39 (100.0%) M71a 43 (100.0%)
M72 18 (100.0%)	M72a 14 (100.0%)
M73 26 (100.0%)	M73 11 (100.0%)
M74 104 (100.0%)	M74a 32 (100.0%) M74b 66 (100.0%)
M76 25 (100.0%)	M76 16 (100.0%)
M91 23 (100.0%)	M91a 18 (100.0%)
Q 425 (99.5%)	Q1 349 (99.4%)	Q1 127 (98.4%) Q1a 129 (100.0%) Q1c 35 (100.0%) Q1d 12 (100.0%) Q1e 22 (100.0%) Q1f 21 (100.0%)
Q2 35 (100.0%)	Q2a 34 (100.0%)
Q3 41 (100.0%)	Q3a 33 (100.0%)
Z 211 (97.2%)	Z1 92 (100.0%)	Z1a 89 (100.0%)
Z3 71 (93.4%)	Z3 22 (81.5%) Z3a 22 (100.0%) Z3b 10 (100.0%) Z3d 10 (100.0%)
Z4 31 (96.9%)	Z4 10 (100.0%) Z4a 21 (95.5%)

Lineage

Top Level HG

Top Level HG
Branch (ltr-num)

HG Branch
(ltr-num-ltr)

L 6131 (99.7%)

L0 1671 (99.8%)

L0a 677 (99.9%)
L0d 812 (99.8%)
L0f 50 (100.0%)
L0g 10 (100.0%)
L0k 120 (100.0%)

L1 849 (99.8%)

L1b 287 (99.7%)
L1c 562 (99.8%)

L2 1322 (99.8%)

L2 1309 (98.8%)

L2 13 (100.0%)
L2a 1037 (99.8%)
L2b 101 (99.0%)
L2c 130 (100.0%)
L2d 24 (100.0%)
L2e 17 (100.0%)

L3 2131 (99.6%)

L3 2126 (99.3%)

L3a 29 (100.0%)
L3b 396 (99.5%)
L3d 396 (100.0%)
L3e 878 (99.8%)
L3f 260 (100.0%)
L3h 69 (98.6%)
L3i 36 (97.3%)
L3k 18 (94.7%)
L3x 41 (100.0%)

L4 109 (98.2%)

L4a 19 (95.0%)
L4b 90 (98.9%)

L5 37 (100.0%)

L5a 29 (100.0%)

L6 12 (100.0%)

M 11718 (99.5%)

C 1979 (99.7%)

C 524 (99.8%)

C1 348 (100.0%)

C1b 136 (100.0%)
C1c 58 (100.0%)
C1d 145 (100.0%)

C4 738 (99.6%)

C4 29 (100.0%)
C4a 444 (99.8%)
C4b 224 (99.1%)
C4c 33 (100.0%)

C5 182 (100.0%)

C5a 70 (100.0%)
C5b 43 (100.0%)
C5c 36 (100.0%)
C5d 32 (100.0%)

C7 187 (98.9%)

C7 26 (100.0%)
C7a 156 (99.4%)

D 2610 (99.7%)

D1 477 (100.0%)

D1 274 (100.0%)
D1a 27 (100.0%)
D1e 20 (100.0%)
D1f 52 (100.0%)
D1g 36 (100.0%)
D1j 37 (100.0%)

D2 96 (100.0%)

D2a 64 (100.0%)
D2b 22 (100.0%)

D3 45 (100.0%)

D4 1552 (99.6%)

D4 73 (100.0%)
D4a 162 (99.4%)
D4b 278 (99.6%)
D4c 79 (100.0%)
D4e 182 (99.5%)
D4f 16 (100.0%)
D4g 81 (98.8%)
D4h 118 (100.0%)
D4i 44 (100.0%)
D4j 302 (99.3%)
D4l 41 (100.0%)
D4m 34 (100.0%)
D4n 18 (100.0%)
D4o 57 (100.0%)
D4p 12 (100.0%)
D4q 27 (100.0%)
D4s 13 (100.0%)

D5 407 (99.5%)

D5a 222 (100.0%)
D5b 160 (98.8%)
D5c 24 (100.0%)

D6 33 (100.0%)

D6a 20 (100.0%)
D6c 13 (100.0%)

E 460 (98.9%)

E1 377 (98.7%)

E1a 375 (98.7%)

E2 83 (100.0%)

E2a 49 (100.0%)
E2b 32 (100.0%)

G 553 (99.8%)

G 10 (100.0%)

G1 165 (100.0%)

G1a 82 (100.0%)
G1b 68 (100.0%)
G1c 15 (100.0%)

G2 318 (100.0%)

G2a 253 (100.0%)
G2b 50 (100.0%)
G2c 10 (100.0%)

G3 56 (98.2%)

G3a 38 (97.4%)
G3b 18 (100.0%)

M 5480 (99.4%)

M 57 (98.3%)

M1 231 (100.0%)

M1 17 (100.0%)
M1a 181 (100.0%)
M1b 33 (100.0%)

M2 243 (98.0%)

M2a 131 (98.5%)
M2b 100 (97.1%)

M3 177 (100.0%)

M3a 89 (100.0%)
M3c 45 (100.0%)
M3d 29 (100.0%)

M4 24 (92.3%)

M4a 15 (93.8%)

M5 190 (98.4%)

M5a 139 (100.0%)
M5b 29 (100.0%)
M5c 16 (88.9%)

M6 26 (100.0%)

M6a 21 (100.0%)

M7 1532 (99.8%)

M7a 106 (100.0%)
M7b 654 (99.7%)
M7c 772 (99.9%)

M8 98 (100.0%)

M8a 97 (100.0%)

M9 317 (99.7%)

M9a 313 (100.0%)

M10 67 (100.0%)

M10a 58 (100.0%)

M11 36 (100.0%)

M11a 20 (100.0%)
M11b 10 (100.0%)

M12 110 (100.0%)

M12a 64 (100.0%)
M12b 44 (100.0%)

M13 72 (100.0%)

M13a 41 (100.0%)
M13b 13 (100.0%)
M13c 17 (100.0%)

M17 59 (100.0%)

M17a 20 (100.0%)
M17c 39 (100.0%)

M18 25 (92.6%)

M18a 16 (100.0%)

M20 60 (100.0%)

M21 82 (100.0%)

M21a 33 (100.0%)
M21b 49 (100.0%)

M23 232 (99.6%)

M24 44 (100.0%)

M24a 25 (100.0%)
M24b 18 (100.0%)

M26 10 (100.0%)

M27 144 (100.0%)

M27a 49 (100.0%)
M27b 66 (100.0%)
M27c 29 (100.0%)

M28 62 (100.0%)

M28a 56 (100.0%)

M29 15 (100.0%)

M30 127 (100.0%)

M30 67 (100.0%)
M30b 10 (100.0%)
M30c 14 (100.0%)
M30d 14 (100.0%)

M31 29 (100.0%)

M31a 24 (100.0%)

M32 163 (97.6%)

M32a 10 (100.0%)
M32c 151 (98.7%)

M33 89 (100.0%)

M33a 42 (100.0%)
M33b 18 (100.0%)
M33c 21 (100.0%)

M34 11 (100.0%)

M35 99 (100.0%)

M35a 32 (100.0%)
M35b 58 (100.0%)

M36 37 (97.4%)

M36d 27 (96.4%)

M37 33 (97.1%)

M37 21 (100.0%)
M37e 10 (90.9%)

M38 24 (100.0%)

M39 42 (100.0%)

M39b 29 (100.0%)

M40 29 (100.0%)

M40a 28 (100.0%)

M41 12 (100.0%)

M42 61 (96.8%)

M42 22 (100.0%)
M42a 22 (95.7%)
M42b 17 (94.4%)

M44 12 (100.0%)

M44a 11 (100.0%)

M45 29 (100.0%)

M45 10 (100.0%)
M45a 19 (100.0%)

M46 12 (100.0%)

M49 43 (100.0%)

M49a 16 (100.0%)
M49c 14 (100.0%)

M50 18 (100.0%)

M50a 13 (100.0%)

M51 52 (100.0%)

M51a 44 (100.0%)

M52 49 (94.2%)

M52a 28 (90.3%)
M52b 20 (100.0%)

M53 25 (92.6%)

M53b 23 (95.8%)

M54 11 (100.0%)

M55 14 (100.0%)

M57 13 (100.0%)

M60 14 (100.0%)

M60a 10 (100.0%)

M61 26 (100.0%)

M61 17 (100.0%)

M62 22 (100.0%)

M62b 18 (100.0%)

M65 38 (100.0%)

M65a 27 (100.0%)

M66 12 (92.3%)

M68 26 (100.0%)

M68a 25 (100.0%)

M69 14 (100.0%)

M69a 13 (100.0%)

M71 95 (100.0%)

M71 39 (100.0%)
M71a 43 (100.0%)

M72 18 (100.0%)

M72a 14 (100.0%)

M73 26 (100.0%)

M73 11 (100.0%)

M74 104 (100.0%)

M74a 32 (100.0%)
M74b 66 (100.0%)

M76 25 (100.0%)

M76 16 (100.0%)

M91 23 (100.0%)

M91a 18 (100.0%)

Q 425 (99.5%)

Q1 349 (99.4%)

Q1 127 (98.4%)
Q1a 129 (100.0%)
Q1c 35 (100.0%)
Q1d 12 (100.0%)
Q1e 22 (100.0%)
Q1f 21 (100.0%)

Q2 35 (100.0%)

Q2a 34 (100.0%)

Q3 41 (100.0%)

Q3a 33 (100.0%)

Z 211 (97.2%)

Z1 92 (100.0%)

Z1a 89 (100.0%)

Z3 71 (93.4%)

Z3 22 (81.5%)
Z3a 22 (100.0%)
Z3b 10 (100.0%)
Z3d 10 (100.0%)

Z4 31 (96.9%)

Z4 10 (100.0%)
Z4a 21 (95.5%)

All haplogroup branches containing this variant

HG Branch	Sequence Count
A17	2
B4a	2
B5b	1
C	524
C1a	9
C1b	136
C1c	58
C1d	145
C4	29
C4a	444
C4b	224
C4c	33
C4d	5
C4e	3
C5	1
C5a	70
C5b	43
C5c	36
C5d	32
C7	26
C7a	156
C7b	5
D1	274
D1a	27
D1b	3
D1c	5
D1d	5
D1e	20
D1f	52
D1g	36
D1h	4
D1i	6
D1j	37
D1k	4
D1m	2
D1n	2
D2	8
D2a	64
D2b	22
D2c	2
D3	45
D4	73
D4a	162
D4b	278
D4c	79
D4d	1
D4e	182
D4f	16
D4g	81
D4h	118
D4i	44
D4j	302
D4k	8
D4l	41
D4m	34
D4n	18
D4o	57
D4p	12
D4q	27
D4s	13
D4t	6
D5	1
D5a	222
D5b	160
D5c	24
D6a	20
D6c	13
E1	2
E1a	375
E2	2
E2a	49
E2b	32
F1	1
F1a	2
F2a	1
F3b	1
G	10
G1a	82
G1b	68
G1c	15
G2	5
G2a	253
G2b	50
G2c	10
G3a	38
G3b	18
G4	4
H	1
H101	1
H1a	1
H1b	1
H4d	1
HV0f	1
I4a	6
J2a	1
K1a	1
L0a	677
L0b	2
L0d	812
L0f	50
L0g	10
L0k	120
L1b	287
L1c	562
L2	13
L2a	1037
L2b	101
L2c	130
L2d	24
L2e	17
L3	5
L3a	29
L3b	396
L3c	3
L3d	396
L3e	878
L3f	260
L3h	69
L3i	36
L3k	18
L3x	41
L4a	19
L4b	90
L5a	29
L5b	8
L6a	7
L6b	5
M	57
M1	17
M10	9
M10a	58
M11a	20
M11b	10
M11c	2
M11d	4
M12	2
M12a	64
M12b	44
M13	1
M13a	41
M13b	13
M13c	17
M14	2
M15	2
M17a	20
M17c	39
M18	3
M18a	16
M18b	4
M18c	2
M19	3
M1a	181
M1b	33
M2	7
M20	60
M21a	33
M21b	49
M22a	5
M22b	4
M23	232
M24	1
M24a	25
M24b	18
M25	7
M26	10
M27a	49
M27b	66
M27c	29
M28a	56
M28b	6
M29a	6
M29b	9
M2a	131
M2b	100
M2c	5
M3	8
M30	67
M30a	8
M30b	10

HG Branch	Sequence Count
M30c	14
M30d	14
M30e	6
M30f	4
M30g	4
M31a	24
M31b	4
M31c	1
M32	2
M32a	10
M32c	151
M33	1
M33a	42
M33b	18
M33c	21
M33d	7
M34	1
M34a	8
M34b	2
M35	5
M35a	32
M35b	58
M35c	4
M36a	2
M36b	1
M36c	7
M36d	27
M37	21
M37d	2
M37e	10
M38	6
M38a	3
M38b	6
M38c	7
M38d	1
M38e	1
M39	1
M39a	9
M39b	29
M39c	3
M3a	89
M3b	6
M3c	45
M3d	29
M4	7
M40	1
M40a	28
M41	1
M41a	5
M41b	3
M41c	3
M42	22
M42a	22
M42b	17
M43	1
M43a	4
M43b	4
M44	1
M44a	11
M45	10
M45a	19
M46	7
M46a	5
M48	2
M49	2
M49a	16
M49c	14
M49d	3
M49e	8
M4a	15
M4b	2
M5	3
M50	5
M50a	13
M51a	44
M51b	8
M52	1
M52a	28
M52b	20
M53	2
M53b	23
M54	11
M55	14
M56	2
M57	2
M57a	7
M57b	4
M58	5
M59	8
M5a	139
M5b	29
M5c	16
M5d	3
M6	5
M60	1
M60a	10
M60b	3
M61	17
M61a	9
M62a	4
M62b	18
M63	6
M64	5
M65	2
M65a	27
M65b	9
M66	1
M66a	4
M66b	7
M67	2
M68	1
M68a	25
M69	1
M69a	13
M6a	21
M70	6
M71	39
M71a	43
M71b	6
M71c	7
M72	4
M72a	14
M73	11
M73a	7
M73b	8
M74	6
M74a	32
M74b	66
M75	8
M76	16
M76a	9
M77	3
M79	6
M7a	106
M7b	654
M7c	772
M8	1
M80	2
M81	3
M8a	97
M91a	18
M91b	5
M9a	313
M9b	4
N5a	1
N9a	1
Q1	127
Q1a	129
Q1b	3
Q1c	35
Q1d	12
Q1e	22
Q1f	21
Q2a	34
Q2b	1
Q3	5
Q3a	33
Q3b	3
R5a	1
R7b	1
T2b	1
U1a	2
U5a	1
U5b	1
W6	1
Z	1
Z1	3
Z1a	89
Z2	9
Z3	22
Z3a	22
Z3b	10
Z3c	7
Z3d	10
Z4	10
Z4a	21
Z5	1
Z7	6
Total	17883

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High Frequency Haplogroups ?click for calculation criteria

m.9540T>C: 17883 sequences (31.423% overall in the FL sequence set)

All haplogroup branches containing this variant

High Frequency Haplogroups