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MITOMAP: Mitochondrial DNA Function Locations

Last Edited: Sep 16, 2015
Map Locus Starting Ending Shorthand Description Reference
MT-OHR57 57 57 CR:OH57 H-strand origin 1
MT-HV2 57 372 CR:HVS2/HV2 Hypervariable segment 2 [classic:73-340 ] 3
MT-OHR 110 441 CR:OH H-strand origins 4
MT-CSB1 213 235 CR:CSB1 Conserved sequence block 1 1
MT-TFX 233 260 CR:TFX mtTF1 binding site 1
MT-TFY 276 303 CR:TFY mtTF1 binding site 1
MT-CSB2 299 315 CR:CSB2 Conserved sequence block 2 2
MT-HPR 317 321 CR:HPR replication primer 2
MT-CSB3 346 363 CR:CSB3 Conserved sequence block 3 1
MT-4H 371 379 CR:mt4H mt4 H-strand control element 1
MT-3H 384 391 CR:mt3H mt3 H-strand control element 1
MT-LSP 392 445 CR:PL L-strand promoter 5
MT-TFL 418 445 CR:mtTF1 mtTF1 binding site 1
MT-HV3 438 574 CR:HVS3/HV3 Hypervariable segment 3 2
MT-TFH 523 550 CR:TFH mtTF1 binding site 1
MT-HSP1 545 567 CR:PH1 Major H-strand promoter 5
MT-TF 577 647 F tRNA phenylalanine 1
MT-HSP2 645 645 PH2 Minor H-strand promoter 3
MT-RNR1 648 1601 12S 12S ribosomal RNA 2
MT-TV 1602 1670 V tRNA valine 1
MT-RNR2 1671 3229 16S 16S ribosomal RNA 2
MT-RNR3 3206 3229 - 5S-like sequence 1
MT-TER 3229 3256 - Transcription terminator 4
MT-TL1 3230 3304 L(UUA/G) tRNA leucine 1 1
MT-NC1 3305 3306 NC1 non-coding nucleotides 0
MT-ND1 3307 4262 ND1 NADH Dehydrogenase subunit 1 3
MT-TI 4263 4331 I tRNA isoleucine 1
MT-TQ 4329 4400 Q tRNA glutamine 1
MT-NC2 4401 4401 NC2 non-coding nucleotides 0
MT-TM 4402 4469 M tRNA methionine 1
MT-ND2 4470 5511 ND2 NADH dehydrogenase subunit 2 2
MT-TW 5512 5579 W tRNA tryptophan 1
MT-NC3 5580 5586 NC3 non-coding nucleotides 1
MT-TA 5587 5655 A tRNA alanine 1
MT-NC4 5656 5656 NC4 non-coding nucleotides 1
MT-TN 5657 5729 N tRNA asparagine 1
MT-OLR 5721 5798 OL L-strand origin 3
MT-TC 5761 5826 C tRNA cysteine 1
MT-TY 5826 5891 Y tRNA tyrosine 1
MT-NC5 5892 5903 NC5 non-coding nucleotides 0
MT-CO1 5904 7445 COI Cytochrome c oxidase subunit I 2
MT-TS1 7446 7514 S(UCN) tRNA serine 1 2
MT-NC6 7515 7517 NC6 non-coding nucleotides 0
MT-TD 7518 7585 D tRNA aspartic acid 1
MT-CO2 7586 8269 COII Cytochrome c oxidase subunit II 1
MT-NC7 8270 8294 NC7 non-coding nucleotides 1
MT-TK 8295 8364 K tRNA lysine 1
MT-NC8 8365 8365 NC8 non-coding nucleotide 0
MT-ATP8 8366 8572 ATPase8 ATP synthase F0 subunit 8 2
MT-ATP6 8527 9207 ATPase6 ATP synthase F0 subunit 6 1
MT-CO3 9207 9990 COIII Cytochrome c oxidase subunit III 1
MT-TG 9991 10058 G tRNA glycine 1
MT-ND3 10059 10404 ND3 NADH dehydrogenase subunit 3 2
MT-TR 10405 10469 R tRNA arginine 1
MT-ND4L 10470 10766 ND4L NADH dehydrogenase subunit 4L 2
MT-ND4 10760 12137 ND4 NADH dehydrogenase subunit 4 2
MT-TH 12138 12206 H tRNA histidine 1
MT-TS2 12207 12265 S(AGY) tRNA serine2 1
MT-TL2 12266 12336 L(CUN) tRNA leucine2 1
MT-ND5 12337 14148 ND5 NADH dehydrogenase subunit 5 2
MT-ND6 14149 14673 ND6 NADH dehydrogenase subunit 6 2
MT-TE 14674 14742 E tRNA glutamic acid 1
MT-NC9 14743 14746 NC9 non-coding nucleotides 0
MT-CYB 14747 15887 Cytb Cytochrome b 1
MT-TT 15888 15953 T tRNA threonine 1
MT-ATT 15925 499 ATT membrane attachment site 2
MT-NC10 15954 15955 NC10 non-coding nucleotides 0
MT-TP 15956 16023 P tRNA proline 1
MT-CR 16024 576 Control Region Control Region, including Displacement Loop 4
MT-HV1 16024 16383 CR:HVS1/HV1 Hypervariable segment 1 [classic:16024-16365] 3
MT-TAS2 16081 16138 CR:TAS2 extended termination-associated sequence 2
MT-7SDNA 16106 191 CR:7Slike 7S DNA 5
MT-TAS 16157 16172 CR:TAS termination-associated sequence 2
MT-5 16194 16208 CR:mt5 control element 1
MT-3L 16499 16506 CR:mt3L L-strand control element 1


Note: Locus names are the official designations delineated by the given nucleotide numbers. The map positions correspond to the nucleotide pair(np) numbers determined from the DNA sequence.

Notes: mtTF1=mitochondrial transcription factor, Y=either pyrimidine, N=any base.

H-strand replication origin positions have been identified at np 110, 147, 169, 191, 219, 310, 441.

L-strand promoter positions have been identified at np 407, 392-435.

H-strand promoter positions have been identified at np 559-561.

L-strand replication origin positions have been identified at np 5721-5781, 5761, 5799.
Topic revision: r4 - 09 Dec 2017, ShipingZhang
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