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The Most Common Variants in Mitomap (Frequency >5%)

Mitomap currently has over 10,000 mtDNA variants in its set of 32,059 GenBank sequences.
Shown below are the 96 variants (~1% of the total) which have a frequency higher than 5%.

rCRS
Position
Present in ancient root (RSRS) Allele
rCRS → Variant
Allele
Count
Frequency in
Sequence Set
Percentile
8860 RSRS m.8860A>G 31527 98.34% >50%
15326 RSRS m.15326A>G 31512 98.29% >50%
750 RSRS m.750A>G 31410 97.98% >50%
4769 RSRS m.4769A>G 31182 97.26% >50%
1438 RSRS m.1438A>G 30179 94.14% >50%
263 RSRS m.263A>G 29979 93.51% >50%
7028 RSRS m.7028C>T 25290 78.89% >50%
2706 RSRS m.2706A>G 24784 77.31% >50%
11719 RSRS m.11719G>A 24160 75.36% >50%
14766 RSRS m.14766C>T 24091 75.15% >50%
73 RSRS m.73A>G 23631 73.71% >50%
16519 RSRS m.16519T>C 19787 61.72% >50%
310 m.310T>C 14812 46.20% 25-50%
10398 RSRS m.10398A>G 14003 43.68% 25-50%
12705 RSRS m.12705C>T 13381 41.74% 25-50%
16223 RSRS m.16223C>T 12546 39.13% 25-50%
315 m.315C>CC 10752 33.54% 25-50%
9540 RSRS m.9540T>C 10553 32.92% 25-50%
10873 RSRS m.10873T>C 10541 32.88% 25-50%
8701 RSRS m.8701A>G 10523 32.82% 25-50%
309 m.309C>CCT 9290 28.98% 25-50%
15301 m.15301G>A 8833 27.55% 25-50%
152 RSRS m.152T>C 8284 25.84% 25-50%
16189 RSRS m.16189T>C 8147 25.41% 25-50%
489 m.489T>C 7987 24.91% 10-25%
15043 m.15043G>A 7301 22.77% 10-25%
16311 RSRS m.16311T>C 6624 20.66% 10-25%
195 RSRS m.195T>C 6574 20.51% 10-25%
10400 m.10400C>T 6545 20.42% 10-25%
14783 m.14783T>C 6504 20.29% 10-25%
146 RSRS m.146T>C 6314 19.69% 10-25%
16362 m.16362T>C 5411 16.88% 10-25%
3010 m.3010G>A 5046 15.74% 10-25%
12372 m.12372G>A 4519 14.10% 10-25%
11467 m.11467A>G 4213 13.14% 10-25%
12308 m.12308A>G 4193 13.08% 10-25%
16129 RSRS m.16129G>A 4189 13.07% 10-25%
709 m.709G>A 4118 12.85% 10-25%
16183 m.16183A>C 3920 12.23% 10-25%
150 m.150C>T 3787 11.81% 10-25%
16126 m.16126T>C 3713 11.58% 10-25%
11914 RSRS m.11914G>A 3534 11.02% 10-25%
16278 RSRS m.16278C>T 3294 10.27% 10-25%
4216 m.4216T>C 3156 9.84% 5-10%
16294 m.16294C>T 3068 9.57% 5-10%
15452 m.15452C>A 2942 9.18% 5-10%
11251 m.11251A>G 2939 9.17% 5-10%
7521 RSRS m.7521G>A 2849 8.89% 5-10%
769 RSRS m.769G>A 2840 8.86% 5-10%
1018 RSRS m.1018G>A 2832 8.83% 5-10%
13650 RSRS m.13650C>T 2756 8.60% 5-10%
3594 RSRS m.3594C>T 2754 8.59% 5-10%
4104 RSRS m.4104A>G 2732 8.52% 5-10%
7256 RSRS m.7256C>T 2722 8.49% 5-10%
1811 m.1811A>G 2550 7.95% 5-10%
309 m.309_310insCCT 2539 7.92% 5-10%
13105 RSRS m.13105A>G 2490 7.77% 5-10%
16261 m.16261C>T 2395 7.47% 5-10%
14798 m.14798T>C 2360 7.36% 5-10%
16172 m.16172T>C 2222 6.93% 5-10%
16217 m.16217T>C 2201 6.87% 5-10%
13708 m.13708G>A 2185 6.82% 5-10%
12007 m.12007G>A 2149 6.70% 5-10%
16304 m.16304T>C 2107 6.57% 5-10%
8251 m.8251G>A 2063 6.44% 5-10%
16298 m.16298T>C 2039 6.36% 5-10%
10238 m.10238T>C 2006 6.26% 5-10%
5460 m.5460G>A 2003 6.25% 5-10%
204 m.204T>C 1946 6.07% 5-10%
16182 m.16182A>C 1908 5.95% 5-10%
16390 m.16390G>A 1865 5.82% 5-10%
10810 RSRS m.10810T>C 1846 5.76% 5-10%
16319 m.16319G>A 1846 5.76% 5-10%
10688 RSRS m.10688G>A 1823 5.69% 5-10%
8655 RSRS m.8655C>T 1819 5.67% 5-10%
16187 RSRS m.16187C>T 1818 5.67% 5-10%
16093 m.16093T>C 1813 5.66% 5-10%
825 RSRS m.825T>A 1811 5.65% 5-10%
13506 RSRS m.13506C>T 1801 5.62% 5-10%
2758 RSRS m.2758G>A 1788 5.58% 5-10%
7146 RSRS m.7146A>G 1773 5.53% 5-10%
8468 RSRS m.8468C>T 1773 5.53% 5-10%
1888 m.1888G>A 1773 5.53% 5-10%
189 m.189A>G 1768 5.51% 5-10%
2885 RSRS m.2885T>C 1768 5.51% 5-10%
13590 m.13590G>A 1766 5.51% 5-10%
247 RSRS m.247G>A 1747 5.45% 5-10%
248 m.248delA 1702 5.31% 5-10%
16270 m.16270C>T 1694 5.28% 5-10%
199 m.199T>C 1693 5.28% 5-10%
14905 m.14905G>A 1693 5.28% 5-10%
4883 m.4883C>T 1680 5.24% 5-10%
5178 m.5178C>A 1666 5.20% 5-10%
1719 m.1719G>A 1626 5.07% 5-10%
15607 m.15607A>G 1621 5.06% 5-10%
11299 m.11299T>C 1608 5.02% 5-10%
Other:
4312 RSRS m.4312C>T 1052 3.28% <5 %
10664 RSRS m.10664C>T 1050 3.28% <5 %
10915 RSRS m.10915T>C 1278 3.99% <5 %
13276 RSRS m.13276A>G 1038 3.24% <5 %
16230 RSRS m.16230A>G 1014 3.16% <5 %
Topic revision: r3 - 18 Apr 2017, MarieLott
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